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Sieciech 2021-07-22 11:16:51 +02:00
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# English
## What is the CureNet?
### Description
CureNet is an application designed to help you find people who are struggling with or specializing in a given disease
### Reason
Jest wiele osób, które cierpią na jakąś chorobę, wiele z nich jest bardzo unikalna, szczególnie te związane z genami, przez co trudno znaleźć kogokolwiek z kim można byłoby porozmawiać o danej chorobie
## How CureNet can help?
### Patient community
Anyone can create a profile and add one or more diseases. Thanks to this, each user will be able to find other people with a similar problem and be able to simply talk and ask how others deal with particular problems.
### A community of specialists
We also encourage doctors and specialists to join the community, they will have access to the list of their patients, but also to the list of people who have diseases similar to their patients, thanks to which they will have access to a wider group of people with a given disease. They will also be able to discuss their observations with other physicians who also have experience with the disease in question. This is really important in the case of very unique and not yet fully known conditions.
### Disease analysis
We want users to have access to the log of their disease where they can enter how it is progressing. On this basis, together with specialists, we will be able to find some common features for new diseases and predict as many negative symptoms as possible in order to be able to prevent them as much as possible.
# Polski
## Czym jest CureNet?
### Opis
CureNet jest aplikacją, która ma pomóc w znalezieniu osób, która zmaga się lub specjalizuje się w danej chorobie
### Powód
Jest wiele osób, które cierpią na jakąś chorobę, wiele z nich jest bardzo unikalna, szczególnie te związane z genami, przez co trudno znaleźć kogokolwiek z kim można byłoby porozmawiać o danej chorobie
## Jak CureNet ma pomóc?
### Społeczność pacjentów
Każdy może założyć profil oraz dodać jedną lub więcej chorób. Dzięki temu, każdy użytkownik będzie mógł znaleźć inne osoby z podobnym problemem oraz mógł po prostu porozmawiać i zapytać jak inni radzą sobie z poszczególnymi problemami.
### Społeczność specjalistów
Zachęcamy także lekarzy i specjalistów, aby dołączyli do społeczności, będą oni mieli wgląd w listę swoich pacjentów ale także do listy osób, które mają podobne schorzenia jak ich podopieczni, dzięki czemu będą mieli dostęp do szerszego grona osób z daną chorobą. Będą mogli także przedyskutować swoje obserwacje z innymi lekarzami, którzy także mają doświadczenie z daną chorobą. Jest to naprawdę ważne przy bardzo unikalnych i nie dokońca poznanych jeszcze schorzeniach.
### Analiza chorób
Chcemy, aby użytkownicy mieli dostęp do dzinnika swojej choroby, gdzie będą mogli wprowadzać jak ona przebiega. Na tej podstawie wraz ze specjalistami będziemy w stanie znaleźć pewne wsólne cechy dla nowych chorób i przewidzieć jak najwięcej negatywnych symptomów, aby móc im jak najlepiej zapobiec.

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# In all environments, the following files are loaded if they exist,
# the latter taking precedence over the former:
#
# * .env contains default values for the environment variables needed by the app
# * .env.local uncommitted file with local overrides
# * .env.$APP_ENV committed environment-specific defaults
# * .env.$APP_ENV.local uncommitted environment-specific overrides
#
# Real environment variables win over .env files.
#
# DO NOT DEFINE PRODUCTION SECRETS IN THIS FILE NOR IN ANY OTHER COMMITTED FILES.
#
# Run "composer dump-env prod" to compile .env files for production use (requires symfony/flex >=1.2).
# https://symfony.com/doc/current/best_practices.html#use-environment-variables-for-infrastructure-configuration
###> symfony/framework-bundle ###
APP_ENV=dev
APP_SECRET=0fc8d6b67b9f1100b3eb3e3c80d36fda
###< symfony/framework-bundle ###
###> symfony/mailer ###
# MAILER_DSN=smtp://localhost
###< symfony/mailer ###
###> doctrine/doctrine-bundle ###
# Format described at https://www.doctrine-project.org/projects/doctrine-dbal/en/latest/reference/configuration.html#connecting-using-a-url
# IMPORTANT: You MUST configure your server version, either here or in config/packages/doctrine.yaml
#
# DATABASE_URL="sqlite:///%kernel.project_dir%/var/data.db"
# DATABASE_URL="mysql://db_user:db_password@127.0.0.1:3306/db_name?serverVersion=5.7"
DATABASE_URL="postgresql://db_user:db_password@127.0.0.1:5432/db_name?serverVersion=13&charset=utf8"
###< doctrine/doctrine-bundle ###

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# define your env variables for the test env here
KERNEL_CLASS='App\Kernel'
APP_SECRET='$ecretf0rt3st'
SYMFONY_DEPRECATIONS_HELPER=999999
PANTHER_APP_ENV=panther
PANTHER_ERROR_SCREENSHOT_DIR=./var/error-screenshots

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###> symfony/framework-bundle ###
/.env.local
/.env.local.php
/.env.*.local
/config/secrets/prod/prod.decrypt.private.php
/public/bundles/
/var/
/vendor/
###< symfony/framework-bundle ###
###> symfony/phpunit-bridge ###
.phpunit.result.cache
/phpunit.xml
###< symfony/phpunit-bridge ###
###> phpunit/phpunit ###
/phpunit.xml
.phpunit.result.cache
###< phpunit/phpunit ###

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#!/usr/bin/env php
<?php
use App\Kernel;
use Symfony\Bundle\FrameworkBundle\Console\Application;
if (!is_file(dirname(__DIR__).'/vendor/autoload_runtime.php')) {
throw new LogicException('Symfony Runtime is missing. Try running "composer require symfony/runtime".');
}
require_once dirname(__DIR__).'/vendor/autoload_runtime.php';
return function (array $context) {
$kernel = new Kernel($context['APP_ENV'], (bool) $context['APP_DEBUG']);
return new Application($kernel);
};

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#!/usr/bin/env php
<?php
if (!ini_get('date.timezone')) {
ini_set('date.timezone', 'UTC');
}
if (is_file(dirname(__DIR__).'/vendor/phpunit/phpunit/phpunit')) {
define('PHPUNIT_COMPOSER_INSTALL', dirname(__DIR__).'/vendor/autoload.php');
require PHPUNIT_COMPOSER_INSTALL;
PHPUnit\TextUI\Command::main();
} else {
if (!is_file(dirname(__DIR__).'/vendor/symfony/phpunit-bridge/bin/simple-phpunit.php')) {
echo "Unable to find the `simple-phpunit.php` script in `vendor/symfony/phpunit-bridge/bin/`.\n";
exit(1);
}
require dirname(__DIR__).'/vendor/symfony/phpunit-bridge/bin/simple-phpunit.php';
}

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{
"type": "project",
"license": "proprietary",
"minimum-stability": "stable",
"prefer-stable": true,
"require": {
"php": ">=7.2.5",
"ext-ctype": "*",
"ext-iconv": "*",
"composer/package-versions-deprecated": "1.11.99.2",
"doctrine/annotations": "^1.0",
"doctrine/doctrine-bundle": "^2.4",
"doctrine/doctrine-migrations-bundle": "^3.1",
"doctrine/orm": "^2.9",
"phpdocumentor/reflection-docblock": "^5.2",
"sensio/framework-extra-bundle": "^6.1",
"symfony/asset": "5.3.*",
"symfony/console": "5.3.*",
"symfony/dotenv": "5.3.*",
"symfony/expression-language": "5.3.*",
"symfony/flex": "^1.3.1",
"symfony/form": "5.3.*",
"symfony/framework-bundle": "5.3.*",
"symfony/http-client": "5.3.*",
"symfony/intl": "5.3.*",
"symfony/mailer": "5.3.*",
"symfony/mime": "5.3.*",
"symfony/monolog-bundle": "^3.1",
"symfony/notifier": "5.3.*",
"symfony/process": "5.3.*",
"symfony/property-access": "5.3.*",
"symfony/property-info": "5.3.*",
"symfony/proxy-manager-bridge": "5.3.*",
"symfony/runtime": "5.3.*",
"symfony/security-bundle": "5.3.*",
"symfony/serializer": "5.3.*",
"symfony/string": "5.3.*",
"symfony/translation": "5.3.*",
"symfony/twig-bundle": "^5.3",
"symfony/validator": "5.3.*",
"symfony/web-link": "5.3.*",
"symfony/yaml": "5.3.*",
"twig/extra-bundle": "^2.12|^3.0",
"twig/twig": "^2.12|^3.0"
},
"require-dev": {
"phpunit/phpunit": "^9.5",
"symfony/browser-kit": "^5.3",
"symfony/css-selector": "^5.3",
"symfony/debug-bundle": "^5.3",
"symfony/maker-bundle": "^1.0",
"symfony/phpunit-bridge": "^5.3",
"symfony/stopwatch": "^5.3",
"symfony/var-dumper": "^5.3",
"symfony/web-profiler-bundle": "^5.3"
},
"config": {
"optimize-autoloader": true,
"preferred-install": {
"*": "dist"
},
"sort-packages": true
},
"autoload": {
"psr-4": {
"App\\": "src/"
}
},
"autoload-dev": {
"psr-4": {
"App\\Tests\\": "tests/"
}
},
"replace": {
"symfony/polyfill-ctype": "*",
"symfony/polyfill-iconv": "*",
"symfony/polyfill-php72": "*"
},
"scripts": {
"auto-scripts": {
"cache:clear": "symfony-cmd",
"assets:install %PUBLIC_DIR%": "symfony-cmd"
},
"post-install-cmd": [
"@auto-scripts"
],
"post-update-cmd": [
"@auto-scripts"
]
},
"conflict": {
"symfony/symfony": "*"
},
"extra": {
"symfony": {
"allow-contrib": false,
"require": "5.3.*"
}
}
}

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<?php
return [
Symfony\Bundle\FrameworkBundle\FrameworkBundle::class => ['all' => true],
Sensio\Bundle\FrameworkExtraBundle\SensioFrameworkExtraBundle::class => ['all' => true],
Symfony\Bundle\TwigBundle\TwigBundle::class => ['all' => true],
Symfony\Bundle\WebProfilerBundle\WebProfilerBundle::class => ['dev' => true, 'test' => true],
Symfony\Bundle\MonologBundle\MonologBundle::class => ['all' => true],
Symfony\Bundle\DebugBundle\DebugBundle::class => ['dev' => true],
Symfony\Bundle\MakerBundle\MakerBundle::class => ['dev' => true],
Doctrine\Bundle\DoctrineBundle\DoctrineBundle::class => ['all' => true],
Doctrine\Bundle\MigrationsBundle\DoctrineMigrationsBundle::class => ['all' => true],
Symfony\Bundle\SecurityBundle\SecurityBundle::class => ['all' => true],
Twig\Extra\TwigExtraBundle\TwigExtraBundle::class => ['all' => true],
];

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framework:
cache:
# Unique name of your app: used to compute stable namespaces for cache keys.
#prefix_seed: your_vendor_name/app_name
# The "app" cache stores to the filesystem by default.
# The data in this cache should persist between deploys.
# Other options include:
# Redis
#app: cache.adapter.redis
#default_redis_provider: redis://localhost
# APCu (not recommended with heavy random-write workloads as memory fragmentation can cause perf issues)
#app: cache.adapter.apcu
# Namespaced pools use the above "app" backend by default
#pools:
#my.dedicated.cache: null

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debug:
# Forwards VarDumper Data clones to a centralized server allowing to inspect dumps on CLI or in your browser.
# See the "server:dump" command to start a new server.
dump_destination: "tcp://%env(VAR_DUMPER_SERVER)%"

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monolog:
handlers:
main:
type: stream
path: "%kernel.logs_dir%/%kernel.environment%.log"
level: debug
channels: ["!event"]
# uncomment to get logging in your browser
# you may have to allow bigger header sizes in your Web server configuration
#firephp:
# type: firephp
# level: info
#chromephp:
# type: chromephp
# level: info
console:
type: console
process_psr_3_messages: false
channels: ["!event", "!doctrine", "!console"]

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web_profiler:
toolbar: true
intercept_redirects: false
framework:
profiler: { only_exceptions: false }

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doctrine:
dbal:
url: '%env(resolve:DATABASE_URL)%'
# IMPORTANT: You MUST configure your server version,
# either here or in the DATABASE_URL env var (see .env file)
#server_version: '13'
orm:
auto_generate_proxy_classes: true
naming_strategy: doctrine.orm.naming_strategy.underscore_number_aware
auto_mapping: true
mappings:
App:
is_bundle: false
type: annotation
dir: '%kernel.project_dir%/src/Entity'
prefix: 'App\Entity'
alias: App

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doctrine_migrations:
migrations_paths:
# namespace is arbitrary but should be different from App\Migrations
# as migrations classes should NOT be autoloaded
'DoctrineMigrations': '%kernel.project_dir%/migrations'
enable_profiler: '%kernel.debug%'

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# see https://symfony.com/doc/current/reference/configuration/framework.html
framework:
secret: '%env(APP_SECRET)%'
#csrf_protection: true
http_method_override: false
# Enables session support. Note that the session will ONLY be started if you read or write from it.
# Remove or comment this section to explicitly disable session support.
session:
handler_id: null
cookie_secure: auto
cookie_samesite: lax
storage_factory_id: session.storage.factory.native
#esi: true
#fragments: true
php_errors:
log: true
when@test:
framework:
test: true
session:
storage_factory_id: session.storage.factory.mock_file

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framework:
mailer:
dsn: '%env(MAILER_DSN)%'

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framework:
notifier:
#chatter_transports:
# slack: '%env(SLACK_DSN)%'
# telegram: '%env(TELEGRAM_DSN)%'
#texter_transports:
# twilio: '%env(TWILIO_DSN)%'
# nexmo: '%env(NEXMO_DSN)%'
channel_policy:
# use chat/slack, chat/telegram, sms/twilio or sms/nexmo
urgent: ['email']
high: ['email']
medium: ['email']
low: ['email']
admin_recipients:
- { email: admin@example.com }

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# As of Symfony 5.1, deprecations are logged in the dedicated "deprecation" channel when it exists
#monolog:
# channels: [deprecation]
# handlers:
# deprecation:
# type: stream
# channels: [deprecation]
# path: php://stderr

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doctrine:
orm:
auto_generate_proxy_classes: false
metadata_cache_driver:
type: pool
pool: doctrine.system_cache_pool
query_cache_driver:
type: pool
pool: doctrine.system_cache_pool
result_cache_driver:
type: pool
pool: doctrine.result_cache_pool
framework:
cache:
pools:
doctrine.result_cache_pool:
adapter: cache.app
doctrine.system_cache_pool:
adapter: cache.system

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monolog:
handlers:
main:
type: fingers_crossed
action_level: error
handler: nested
excluded_http_codes: [404, 405]
buffer_size: 50 # How many messages should be saved? Prevent memory leaks
nested:
type: stream
path: php://stderr
level: debug
formatter: monolog.formatter.json
console:
type: console
process_psr_3_messages: false
channels: ["!event", "!doctrine"]

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framework:
router:
utf8: true
# Configure how to generate URLs in non-HTTP contexts, such as CLI commands.
# See https://symfony.com/doc/current/routing.html#generating-urls-in-commands
#default_uri: http://localhost
when@prod:
framework:
router:
strict_requirements: null

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security:
# https://symfony.com/doc/current/security/experimental_authenticators.html
enable_authenticator_manager: true
# https://symfony.com/doc/current/security.html#where-do-users-come-from-user-providers
providers:
users_in_memory: { memory: null }
firewalls:
dev:
pattern: ^/(_(profiler|wdt)|css|images|js)/
security: false
main:
lazy: true
provider: users_in_memory
# activate different ways to authenticate
# https://symfony.com/doc/current/security.html#firewalls-authentication
# https://symfony.com/doc/current/security/impersonating_user.html
# switch_user: true
# Easy way to control access for large sections of your site
# Note: Only the *first* access control that matches will be used
access_control:
# - { path: ^/admin, roles: ROLE_ADMIN }
# - { path: ^/profile, roles: ROLE_USER }

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sensio_framework_extra:
router:
annotations: false

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doctrine:
dbal:
# "TEST_TOKEN" is typically set by ParaTest
dbname_suffix: '_test%env(default::TEST_TOKEN)%'

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monolog:
handlers:
main:
type: fingers_crossed
action_level: error
handler: nested
excluded_http_codes: [404, 405]
channels: ["!event"]
nested:
type: stream
path: "%kernel.logs_dir%/%kernel.environment%.log"
level: debug

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framework:
validation:
not_compromised_password: false

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web_profiler:
toolbar: false
intercept_redirects: false
framework:
profiler: { collect: false }

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framework:
default_locale: en
translator:
default_path: '%kernel.project_dir%/translations'
fallbacks:
- en
# providers:
# crowdin:
# dsn: '%env(CROWDIN_DSN)%'
# loco:
# dsn: '%env(LOCO_DSN)%'
# lokalise:
# dsn: '%env(LOKALISE_DSN)%'

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twig:
default_path: '%kernel.project_dir%/templates'
when@test:
twig:
strict_variables: true

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framework:
validation:
email_validation_mode: html5
# Enables validator auto-mapping support.
# For instance, basic validation constraints will be inferred from Doctrine's metadata.
#auto_mapping:
# App\Entity\: []

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<?php
if (file_exists(dirname(__DIR__).'/var/cache/prod/App_KernelProdContainer.preload.php')) {
require dirname(__DIR__).'/var/cache/prod/App_KernelProdContainer.preload.php';
}

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#index:
# path: /
# controller: App\Controller\DefaultController::index

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controllers:
resource: ../../src/Controller/
type: annotation
kernel:
resource: ../../src/Kernel.php
type: annotation

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web_profiler_wdt:
resource: '@WebProfilerBundle/Resources/config/routing/wdt.xml'
prefix: /_wdt
web_profiler_profiler:
resource: '@WebProfilerBundle/Resources/config/routing/profiler.xml'
prefix: /_profiler

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when@dev:
_errors:
resource: '@FrameworkBundle/Resources/config/routing/errors.xml'
prefix: /_error

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# This file is the entry point to configure your own services.
# Files in the packages/ subdirectory configure your dependencies.
# Put parameters here that don't need to change on each machine where the app is deployed
# https://symfony.com/doc/current/best_practices.html#use-parameters-for-application-configuration
parameters:
services:
# default configuration for services in *this* file
_defaults:
autowire: true # Automatically injects dependencies in your services.
autoconfigure: true # Automatically registers your services as commands, event subscribers, etc.
# makes classes in src/ available to be used as services
# this creates a service per class whose id is the fully-qualified class name
App\:
resource: '../src/'
exclude:
- '../src/DependencyInjection/'
- '../src/Entity/'
- '../src/Kernel.php'
- '../src/Tests/'
# add more service definitions when explicit configuration is needed
# please note that last definitions always *replace* previous ones

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<?xml version="1.0" encoding="UTF-8"?>
<!-- https://phpunit.readthedocs.io/en/latest/configuration.html -->
<phpunit xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:noNamespaceSchemaLocation="vendor/phpunit/phpunit/phpunit.xsd"
backupGlobals="false"
colors="true"
bootstrap="tests/bootstrap.php"
convertDeprecationsToExceptions="false"
>
<php>
<ini name="display_errors" value="1" />
<ini name="error_reporting" value="-1" />
<server name="APP_ENV" value="test" force="true" />
<server name="SHELL_VERBOSITY" value="-1" />
<server name="SYMFONY_PHPUNIT_REMOVE" value="" />
<server name="SYMFONY_PHPUNIT_VERSION" value="9.5" />
</php>
<testsuites>
<testsuite name="Project Test Suite">
<directory>tests</directory>
</testsuite>
</testsuites>
<coverage processUncoveredFiles="true">
<include>
<directory suffix=".php">src</directory>
</include>
</coverage>
<listeners>
<listener class="Symfony\Bridge\PhpUnit\SymfonyTestsListener" />
</listeners>
<!-- Run `composer require symfony/panther` before enabling this extension -->
<!--
<extensions>
<extension class="Symfony\Component\Panther\ServerExtension" />
</extensions>
-->
</phpunit>

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<?php
use App\Kernel;
require_once dirname(__DIR__).'/vendor/autoload_runtime.php';
return function (array $context) {
return new Kernel($context['APP_ENV'], (bool) $context['APP_DEBUG']);
};

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<?php
namespace App;
use Symfony\Bundle\FrameworkBundle\Kernel\MicroKernelTrait;
use Symfony\Component\DependencyInjection\Loader\Configurator\ContainerConfigurator;
use Symfony\Component\HttpKernel\Kernel as BaseKernel;
use Symfony\Component\Routing\Loader\Configurator\RoutingConfigurator;
class Kernel extends BaseKernel
{
use MicroKernelTrait;
protected function configureContainer(ContainerConfigurator $container): void
{
$container->import('../config/{packages}/*.yaml');
$container->import('../config/{packages}/'.$this->environment.'/*.yaml');
if (is_file(\dirname(__DIR__).'/config/services.yaml')) {
$container->import('../config/services.yaml');
$container->import('../config/{services}_'.$this->environment.'.yaml');
} else {
$container->import('../config/{services}.php');
}
}
protected function configureRoutes(RoutingConfigurator $routes): void
{
$routes->import('../config/{routes}/'.$this->environment.'/*.yaml');
$routes->import('../config/{routes}/*.yaml');
if (is_file(\dirname(__DIR__).'/config/routes.yaml')) {
$routes->import('../config/routes.yaml');
} else {
$routes->import('../config/{routes}.php');
}
}
}

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{
"composer/package-versions-deprecated": {
"version": "1.11.99.2"
},
"doctrine/annotations": {
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"webmozart/assert": {
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}
}

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@ -0,0 +1,19 @@
<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8">
<title>{% block title %}Welcome!{% endblock %}</title>
{# Run `composer require symfony/webpack-encore-bundle`
and uncomment the following Encore helpers to start using Symfony UX #}
{% block stylesheets %}
{#{{ encore_entry_link_tags('app') }}#}
{% endblock %}
{% block javascripts %}
{#{{ encore_entry_script_tags('app') }}#}
{% endblock %}
</head>
<body>
{% block body %}{% endblock %}
</body>
</html>

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@ -0,0 +1,11 @@
<?php
use Symfony\Component\Dotenv\Dotenv;
require dirname(__DIR__).'/vendor/autoload.php';
if (file_exists(dirname(__DIR__).'/config/bootstrap.php')) {
require dirname(__DIR__).'/config/bootstrap.php';
} elseif (method_exists(Dotenv::class, 'bootEnv')) {
(new Dotenv())->bootEnv(dirname(__DIR__).'/.env');
}

0
src/backend/translations/.gitignore vendored Normal file
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