commit 7738a807f6a67f01ca210e5768517132f21be3de Author: Sieciech Date: Thu Jul 22 11:16:51 2021 +0200 initial commit diff --git a/README.md b/README.md new file mode 100644 index 0000000..a5eba26 --- /dev/null +++ b/README.md @@ -0,0 +1,27 @@ +# English +## What is the CureNet? +### Description +CureNet is an application designed to help you find people who are struggling with or specializing in a given disease +### Reason +Jest wiele osób, które cierpią na jakąś chorobę, wiele z nich jest bardzo unikalna, szczególnie te związane z genami, przez co trudno znaleźć kogokolwiek z kim można byłoby porozmawiać o danej chorobie +## How CureNet can help? +### Patient community +Anyone can create a profile and add one or more diseases. Thanks to this, each user will be able to find other people with a similar problem and be able to simply talk and ask how others deal with particular problems. +### A community of specialists +We also encourage doctors and specialists to join the community, they will have access to the list of their patients, but also to the list of people who have diseases similar to their patients, thanks to which they will have access to a wider group of people with a given disease. They will also be able to discuss their observations with other physicians who also have experience with the disease in question. This is really important in the case of very unique and not yet fully known conditions. +### Disease analysis +We want users to have access to the log of their disease where they can enter how it is progressing. On this basis, together with specialists, we will be able to find some common features for new diseases and predict as many negative symptoms as possible in order to be able to prevent them as much as possible. + +# Polski +## Czym jest CureNet? +### Opis +CureNet jest aplikacją, która ma pomóc w znalezieniu osób, która zmaga się lub specjalizuje się w danej chorobie +### Powód +Jest wiele osób, które cierpią na jakąś chorobę, wiele z nich jest bardzo unikalna, szczególnie te związane z genami, przez co trudno znaleźć kogokolwiek z kim można byłoby porozmawiać o danej chorobie +## Jak CureNet ma pomóc? +### Społeczność pacjentów +Każdy może założyć profil oraz dodać jedną lub więcej chorób. Dzięki temu, każdy użytkownik będzie mógł znaleźć inne osoby z podobnym problemem oraz mógł po prostu porozmawiać i zapytać jak inni radzą sobie z poszczególnymi problemami. +### Społeczność specjalistów +Zachęcamy także lekarzy i specjalistów, aby dołączyli do społeczności, będą oni mieli wgląd w listę swoich pacjentów ale także do listy osób, które mają podobne schorzenia jak ich podopieczni, dzięki czemu będą mieli dostęp do szerszego grona osób z daną chorobą. Będą mogli także przedyskutować swoje obserwacje z innymi lekarzami, którzy także mają doświadczenie z daną chorobą. Jest to naprawdę ważne przy bardzo unikalnych i nie dokońca poznanych jeszcze schorzeniach. +### Analiza chorób +Chcemy, aby użytkownicy mieli dostęp do dzinnika swojej choroby, gdzie będą mogli wprowadzać jak ona przebiega. Na tej podstawie wraz ze specjalistami będziemy w stanie znaleźć pewne wsólne cechy dla nowych chorób i przewidzieć jak najwięcej negatywnych symptomów, aby móc im jak najlepiej zapobiec. \ No newline at end of file diff --git a/src/backend/.env b/src/backend/.env new file mode 100644 index 0000000..aa67157 --- /dev/null +++ b/src/backend/.env @@ -0,0 +1,32 @@ +# In all environments, the following files are loaded if they exist, +# the latter taking precedence over the former: +# +# * .env contains default values for the environment variables needed by the app +# * .env.local uncommitted file with local overrides +# * .env.$APP_ENV committed environment-specific defaults +# * .env.$APP_ENV.local uncommitted environment-specific overrides +# +# Real environment variables win over .env files. +# +# DO NOT DEFINE PRODUCTION SECRETS IN THIS FILE NOR IN ANY OTHER COMMITTED FILES. +# +# Run "composer dump-env prod" to compile .env files for production use (requires symfony/flex >=1.2). +# https://symfony.com/doc/current/best_practices.html#use-environment-variables-for-infrastructure-configuration + +###> symfony/framework-bundle ### +APP_ENV=dev +APP_SECRET=0fc8d6b67b9f1100b3eb3e3c80d36fda +###< symfony/framework-bundle ### + +###> symfony/mailer ### +# MAILER_DSN=smtp://localhost +###< symfony/mailer ### + +###> doctrine/doctrine-bundle ### +# Format described at https://www.doctrine-project.org/projects/doctrine-dbal/en/latest/reference/configuration.html#connecting-using-a-url +# IMPORTANT: You MUST configure your server version, either here or in config/packages/doctrine.yaml +# +# DATABASE_URL="sqlite:///%kernel.project_dir%/var/data.db" +# DATABASE_URL="mysql://db_user:db_password@127.0.0.1:3306/db_name?serverVersion=5.7" +DATABASE_URL="postgresql://db_user:db_password@127.0.0.1:5432/db_name?serverVersion=13&charset=utf8" +###< doctrine/doctrine-bundle ### diff --git a/src/backend/.env.test b/src/backend/.env.test new file mode 100644 index 0000000..9e7162f --- /dev/null +++ b/src/backend/.env.test @@ -0,0 +1,6 @@ +# define your env variables for the test env here +KERNEL_CLASS='App\Kernel' +APP_SECRET='$ecretf0rt3st' +SYMFONY_DEPRECATIONS_HELPER=999999 +PANTHER_APP_ENV=panther +PANTHER_ERROR_SCREENSHOT_DIR=./var/error-screenshots diff --git a/src/backend/.gitignore b/src/backend/.gitignore new file mode 100644 index 0000000..b5664ba --- /dev/null +++ b/src/backend/.gitignore @@ -0,0 +1,20 @@ + +###> symfony/framework-bundle ### +/.env.local +/.env.local.php +/.env.*.local +/config/secrets/prod/prod.decrypt.private.php +/public/bundles/ +/var/ +/vendor/ +###< symfony/framework-bundle ### + +###> symfony/phpunit-bridge ### +.phpunit.result.cache +/phpunit.xml +###< symfony/phpunit-bridge ### + +###> phpunit/phpunit ### +/phpunit.xml +.phpunit.result.cache +###< phpunit/phpunit ### diff --git a/src/backend/bin/console b/src/backend/bin/console new file mode 100644 index 0000000..c933dc5 --- /dev/null +++ b/src/backend/bin/console @@ -0,0 +1,17 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the filesystem by default. + # The data in this cache should persist between deploys. + # Other options include: + + # Redis + #app: cache.adapter.redis + #default_redis_provider: redis://localhost + + # APCu (not recommended with heavy random-write workloads as memory fragmentation can cause perf issues) + #app: cache.adapter.apcu + + # Namespaced pools use the above "app" backend by default + #pools: + #my.dedicated.cache: null diff --git a/src/backend/config/packages/dev/debug.yaml b/src/backend/config/packages/dev/debug.yaml new file mode 100644 index 0000000..26d4e53 --- /dev/null +++ b/src/backend/config/packages/dev/debug.yaml @@ -0,0 +1,4 @@ +debug: + # Forwards VarDumper Data clones to a centralized server allowing to inspect dumps on CLI or in your browser. + # See the "server:dump" command to start a new server. + dump_destination: "tcp://%env(VAR_DUMPER_SERVER)%" diff --git a/src/backend/config/packages/dev/monolog.yaml b/src/backend/config/packages/dev/monolog.yaml new file mode 100644 index 0000000..b1998da --- /dev/null +++ b/src/backend/config/packages/dev/monolog.yaml @@ -0,0 +1,19 @@ +monolog: + handlers: + main: + type: stream + path: "%kernel.logs_dir%/%kernel.environment%.log" + level: debug + channels: ["!event"] + # uncomment to get logging in your browser + # you may have to allow bigger header sizes in your Web server configuration + #firephp: + # type: firephp + # level: info + #chromephp: + # type: chromephp + # level: info + console: + type: console + process_psr_3_messages: false + channels: ["!event", "!doctrine", "!console"] diff --git a/src/backend/config/packages/dev/web_profiler.yaml b/src/backend/config/packages/dev/web_profiler.yaml new file mode 100644 index 0000000..e92166a --- /dev/null +++ b/src/backend/config/packages/dev/web_profiler.yaml @@ -0,0 +1,6 @@ +web_profiler: + toolbar: true + intercept_redirects: false + +framework: + profiler: { only_exceptions: false } diff --git a/src/backend/config/packages/doctrine.yaml b/src/backend/config/packages/doctrine.yaml new file mode 100644 index 0000000..c319176 --- /dev/null +++ b/src/backend/config/packages/doctrine.yaml @@ -0,0 +1,18 @@ +doctrine: + dbal: + url: '%env(resolve:DATABASE_URL)%' + + # IMPORTANT: You MUST configure your server version, + # either here or in the DATABASE_URL env var (see .env file) + #server_version: '13' + orm: + auto_generate_proxy_classes: true + naming_strategy: doctrine.orm.naming_strategy.underscore_number_aware + auto_mapping: true + mappings: + App: + is_bundle: false + type: annotation + dir: '%kernel.project_dir%/src/Entity' + prefix: 'App\Entity' + alias: App diff --git a/src/backend/config/packages/doctrine_migrations.yaml b/src/backend/config/packages/doctrine_migrations.yaml new file mode 100644 index 0000000..a0a17a0 --- /dev/null +++ b/src/backend/config/packages/doctrine_migrations.yaml @@ -0,0 +1,6 @@ +doctrine_migrations: + migrations_paths: + # namespace is arbitrary but should be different from App\Migrations + # as migrations classes should NOT be autoloaded + 'DoctrineMigrations': '%kernel.project_dir%/migrations' + enable_profiler: '%kernel.debug%' diff --git a/src/backend/config/packages/framework.yaml b/src/backend/config/packages/framework.yaml new file mode 100644 index 0000000..7853e9e --- /dev/null +++ b/src/backend/config/packages/framework.yaml @@ -0,0 +1,24 @@ +# see https://symfony.com/doc/current/reference/configuration/framework.html +framework: + secret: '%env(APP_SECRET)%' + #csrf_protection: true + http_method_override: false + + # Enables session support. Note that the session will ONLY be started if you read or write from it. + # Remove or comment this section to explicitly disable session support. + session: + handler_id: null + cookie_secure: auto + cookie_samesite: lax + storage_factory_id: session.storage.factory.native + + #esi: true + #fragments: true + php_errors: + log: true + +when@test: + framework: + test: true + session: + storage_factory_id: session.storage.factory.mock_file diff --git a/src/backend/config/packages/mailer.yaml b/src/backend/config/packages/mailer.yaml new file mode 100644 index 0000000..56a650d --- /dev/null +++ b/src/backend/config/packages/mailer.yaml @@ -0,0 +1,3 @@ +framework: + mailer: + dsn: '%env(MAILER_DSN)%' diff --git a/src/backend/config/packages/notifier.yaml b/src/backend/config/packages/notifier.yaml new file mode 100644 index 0000000..3984a48 --- /dev/null +++ b/src/backend/config/packages/notifier.yaml @@ -0,0 +1,16 @@ +framework: + notifier: + #chatter_transports: + # slack: '%env(SLACK_DSN)%' + # telegram: '%env(TELEGRAM_DSN)%' + #texter_transports: + # twilio: '%env(TWILIO_DSN)%' + # nexmo: '%env(NEXMO_DSN)%' + channel_policy: + # use chat/slack, chat/telegram, sms/twilio or sms/nexmo + urgent: ['email'] + high: ['email'] + medium: ['email'] + low: ['email'] + admin_recipients: + - { email: admin@example.com } diff --git a/src/backend/config/packages/prod/deprecations.yaml b/src/backend/config/packages/prod/deprecations.yaml new file mode 100644 index 0000000..60026a1 --- /dev/null +++ b/src/backend/config/packages/prod/deprecations.yaml @@ -0,0 +1,8 @@ +# As of Symfony 5.1, deprecations are logged in the dedicated "deprecation" channel when it exists +#monolog: +# channels: [deprecation] +# handlers: +# deprecation: +# type: stream +# channels: [deprecation] +# path: php://stderr diff --git a/src/backend/config/packages/prod/doctrine.yaml b/src/backend/config/packages/prod/doctrine.yaml new file mode 100644 index 0000000..084f59a --- /dev/null +++ b/src/backend/config/packages/prod/doctrine.yaml @@ -0,0 +1,20 @@ +doctrine: + orm: + auto_generate_proxy_classes: false + metadata_cache_driver: + type: pool + pool: doctrine.system_cache_pool + query_cache_driver: + type: pool + pool: doctrine.system_cache_pool + result_cache_driver: + type: pool + pool: doctrine.result_cache_pool + +framework: + cache: + pools: + doctrine.result_cache_pool: + adapter: cache.app + doctrine.system_cache_pool: + adapter: cache.system diff --git a/src/backend/config/packages/prod/monolog.yaml b/src/backend/config/packages/prod/monolog.yaml new file mode 100644 index 0000000..2c02ad8 --- /dev/null +++ b/src/backend/config/packages/prod/monolog.yaml @@ -0,0 +1,17 @@ +monolog: + handlers: + main: + type: fingers_crossed + action_level: error + handler: nested + excluded_http_codes: [404, 405] + buffer_size: 50 # How many messages should be saved? Prevent memory leaks + nested: + type: stream + path: php://stderr + level: debug + formatter: monolog.formatter.json + console: + type: console + process_psr_3_messages: false + channels: ["!event", "!doctrine"] diff --git a/src/backend/config/packages/routing.yaml b/src/backend/config/packages/routing.yaml new file mode 100644 index 0000000..4b766ce --- /dev/null +++ b/src/backend/config/packages/routing.yaml @@ -0,0 +1,12 @@ +framework: + router: + utf8: true + + # Configure how to generate URLs in non-HTTP contexts, such as CLI commands. + # See https://symfony.com/doc/current/routing.html#generating-urls-in-commands + #default_uri: http://localhost + +when@prod: + framework: + router: + strict_requirements: null diff --git a/src/backend/config/packages/security.yaml b/src/backend/config/packages/security.yaml new file mode 100644 index 0000000..030c4de --- /dev/null +++ b/src/backend/config/packages/security.yaml @@ -0,0 +1,25 @@ +security: + # https://symfony.com/doc/current/security/experimental_authenticators.html + enable_authenticator_manager: true + # https://symfony.com/doc/current/security.html#where-do-users-come-from-user-providers + providers: + users_in_memory: { memory: null } + firewalls: + dev: + pattern: ^/(_(profiler|wdt)|css|images|js)/ + security: false + main: + lazy: true + provider: users_in_memory + + # activate different ways to authenticate + # https://symfony.com/doc/current/security.html#firewalls-authentication + + # https://symfony.com/doc/current/security/impersonating_user.html + # switch_user: true + + # Easy way to control access for large sections of your site + # Note: Only the *first* access control that matches will be used + access_control: + # - { path: ^/admin, roles: ROLE_ADMIN } + # - { path: ^/profile, roles: ROLE_USER } diff --git a/src/backend/config/packages/sensio_framework_extra.yaml b/src/backend/config/packages/sensio_framework_extra.yaml new file mode 100644 index 0000000..1821ccc --- /dev/null +++ b/src/backend/config/packages/sensio_framework_extra.yaml @@ -0,0 +1,3 @@ +sensio_framework_extra: + router: + annotations: false diff --git a/src/backend/config/packages/test/doctrine.yaml b/src/backend/config/packages/test/doctrine.yaml new file mode 100644 index 0000000..34c2ebc --- /dev/null +++ b/src/backend/config/packages/test/doctrine.yaml @@ -0,0 +1,4 @@ +doctrine: + dbal: + # "TEST_TOKEN" is typically set by ParaTest + dbname_suffix: '_test%env(default::TEST_TOKEN)%' diff --git a/src/backend/config/packages/test/monolog.yaml b/src/backend/config/packages/test/monolog.yaml new file mode 100644 index 0000000..fc40641 --- /dev/null +++ b/src/backend/config/packages/test/monolog.yaml @@ -0,0 +1,12 @@ +monolog: + handlers: + main: + type: fingers_crossed + action_level: error + handler: nested + excluded_http_codes: [404, 405] + channels: ["!event"] + nested: + type: stream + path: "%kernel.logs_dir%/%kernel.environment%.log" + level: debug diff --git a/src/backend/config/packages/test/validator.yaml b/src/backend/config/packages/test/validator.yaml new file mode 100644 index 0000000..1e5ab78 --- /dev/null +++ b/src/backend/config/packages/test/validator.yaml @@ -0,0 +1,3 @@ +framework: + validation: + not_compromised_password: false diff --git a/src/backend/config/packages/test/web_profiler.yaml b/src/backend/config/packages/test/web_profiler.yaml new file mode 100644 index 0000000..03752de --- /dev/null +++ b/src/backend/config/packages/test/web_profiler.yaml @@ -0,0 +1,6 @@ +web_profiler: + toolbar: false + intercept_redirects: false + +framework: + profiler: { collect: false } diff --git a/src/backend/config/packages/translation.yaml b/src/backend/config/packages/translation.yaml new file mode 100644 index 0000000..abb76aa --- /dev/null +++ b/src/backend/config/packages/translation.yaml @@ -0,0 +1,13 @@ +framework: + default_locale: en + translator: + default_path: '%kernel.project_dir%/translations' + fallbacks: + - en +# providers: +# crowdin: +# dsn: '%env(CROWDIN_DSN)%' +# loco: +# dsn: '%env(LOCO_DSN)%' +# lokalise: +# dsn: '%env(LOKALISE_DSN)%' diff --git a/src/backend/config/packages/twig.yaml b/src/backend/config/packages/twig.yaml new file mode 100644 index 0000000..f9f4cc5 --- /dev/null +++ b/src/backend/config/packages/twig.yaml @@ -0,0 +1,6 @@ +twig: + default_path: '%kernel.project_dir%/templates' + +when@test: + twig: + strict_variables: true diff --git a/src/backend/config/packages/validator.yaml b/src/backend/config/packages/validator.yaml new file mode 100644 index 0000000..350786a --- /dev/null +++ b/src/backend/config/packages/validator.yaml @@ -0,0 +1,8 @@ +framework: + validation: + email_validation_mode: html5 + + # Enables validator auto-mapping support. + # For instance, basic validation constraints will be inferred from Doctrine's metadata. + #auto_mapping: + # App\Entity\: [] diff --git a/src/backend/config/preload.php b/src/backend/config/preload.php new file mode 100644 index 0000000..5ebcdb2 --- /dev/null +++ b/src/backend/config/preload.php @@ -0,0 +1,5 @@ + + + + + + + + + + + + + + + + tests + + + + + + src + + + + + + + + + + diff --git a/src/backend/public/index.php b/src/backend/public/index.php new file mode 100644 index 0000000..9982c21 --- /dev/null +++ b/src/backend/public/index.php @@ -0,0 +1,9 @@ +import('../config/{packages}/*.yaml'); + $container->import('../config/{packages}/'.$this->environment.'/*.yaml'); + + if (is_file(\dirname(__DIR__).'/config/services.yaml')) { + $container->import('../config/services.yaml'); + $container->import('../config/{services}_'.$this->environment.'.yaml'); + } else { + $container->import('../config/{services}.php'); + } + } + + protected function configureRoutes(RoutingConfigurator $routes): void + { + $routes->import('../config/{routes}/'.$this->environment.'/*.yaml'); + $routes->import('../config/{routes}/*.yaml'); + + if (is_file(\dirname(__DIR__).'/config/routes.yaml')) { + 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"github.com/symfony/recipes", + "branch": "master", + "version": "5.3", + "ref": "da64f5a2b6d96f5dc24914517c0350a5f91dee43" + }, + "files": [ + "config/packages/translation.yaml", + "translations/.gitignore" + ] + }, + "symfony/translation-contracts": { + "version": "v2.4.0" + }, + "symfony/twig-bridge": { + "version": "v5.3.3" + }, + "symfony/twig-bundle": { + "version": "5.3", + "recipe": { + "repo": "github.com/symfony/recipes", + "branch": "master", + "version": "5.3", + "ref": "3dd530739a4284e3272274c128dbb7a8140a66f1" + }, + "files": [ + "config/packages/twig.yaml", + "templates/base.html.twig" + ] + }, + "symfony/twig-pack": { + "version": "v1.0.1" + }, + "symfony/validator": { + "version": "4.3", + "recipe": { + "repo": "github.com/symfony/recipes", + "branch": "master", + "version": "4.3", + "ref": "3eb8df139ec05414489d55b97603c5f6ca0c44cb" + }, + "files": [ + "config/packages/test/validator.yaml", + "config/packages/validator.yaml" + ] + }, + "symfony/var-dumper": { + "version": "v5.3.3" + }, + "symfony/var-exporter": { + "version": "v5.3.3" + }, + "symfony/web-link": { + "version": "v5.3.3" + }, + "symfony/web-profiler-bundle": { + "version": "3.3", + "recipe": { + "repo": "github.com/symfony/recipes", + "branch": "master", + "version": "3.3", + "ref": "6bdfa1a95f6b2e677ab985cd1af2eae35d62e0f6" + }, + "files": [ + "config/packages/dev/web_profiler.yaml", + "config/packages/test/web_profiler.yaml", + "config/routes/dev/web_profiler.yaml" + ] + }, + "symfony/yaml": { + "version": "v5.3.3" + }, + "theseer/tokenizer": { + "version": "1.2.0" + }, + "twig/extra-bundle": { + "version": "v3.3.1" + }, + "twig/twig": { + "version": "v3.3.2" + }, + "webmozart/assert": { + "version": "1.10.0" + } +} diff --git a/src/backend/templates/base.html.twig b/src/backend/templates/base.html.twig new file mode 100644 index 0000000..16d7273 --- /dev/null +++ b/src/backend/templates/base.html.twig @@ -0,0 +1,19 @@ + + + + + {% block title %}Welcome!{% endblock %} + {# Run `composer require symfony/webpack-encore-bundle` + and uncomment the following Encore helpers to start using Symfony UX #} + {% block stylesheets %} + {#{{ encore_entry_link_tags('app') }}#} + {% endblock %} + + {% block javascripts %} + {#{{ encore_entry_script_tags('app') }}#} + {% endblock %} + + + {% block body %}{% endblock %} + + diff --git a/src/backend/tests/bootstrap.php b/src/backend/tests/bootstrap.php new file mode 100644 index 0000000..469dcce --- /dev/null +++ b/src/backend/tests/bootstrap.php @@ -0,0 +1,11 @@ +bootEnv(dirname(__DIR__).'/.env'); +} diff --git a/src/backend/translations/.gitignore b/src/backend/translations/.gitignore new file mode 100644 index 0000000..e69de29